genewise output
Score 167.40 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000615_2.0   47 SIKKMPELYNFLMERWAL                          HNLEY 
                     SIKKMPELYNFLMERWAL                          HNLEY 
                     SIKKMPELYNFLMERWAL           Y:Y[tac]       HNLEY 
OMLM01000156.1:50027 taaaacgctatcagctgtTAGTATCCT  Intron 1   CAGCcatgt 
                     ctaatcataatttaggct  <2-----[50083:50362]-2> aataa 
                     cagagtgctttcggagtg                          ccggt 


SPP00000615_2.0   71 DSGEDKNPRLIFYNDKDEEVK                       VVPVK 
                     DS E+K PRLIFYN+KDE VK                        VPVK 
                     DSSEEKKPRLIFYNEKDEVVK                       TVPVK 
OMLM01000156.1:50379 gttggaacccattagaggggaGTGAGGT  Intron 2   CAGagcga 
                     accaaaacgtttaaaaaatta<0-----[50442:51279]-0>ctcta 
                     taagggacgcccttagtgtag                       tttgg 


SPP00000615_2.0   97 KMKADEISSLLDSLGFYKRSEKGEEVPEEFKHFPLRAPRDEL        
                     KMKADEISSLLDSLGFYKRS+KGEEVPEEF+HFPLR PRDEL        
                     KMKADEISSLLDSLGFYKRSQKGEEVPEEFQHFPLRTPRDEL        
OMLM01000156.1:51295 aaagggaaactgtcgttaatcaggggcggtcctcccacaggc        
                     atacaatggttactgtaagcaagaatcaataatctgccgaat        
                     agaacacccggtattctggcgagaggaggtgtccgcccgcgg        


//
Making a Y in phase 2 intron
>OMLM01000156.1:subseq(38630,101420).pep
SIKKMPELYNFLMERWALYHNLEYDSSEEKKPRLIFYNEKDEVVKTVPVKKMKADEISSL
LDSLGFYKRSQKGEEVPEEFQHFPLRTPRDEL
//
>OMLM01000156.1:subseq(38630,101420).[50027:51420].sp
TCCATAAAGAAAATGCCTGAGCTCTATAATTTTCTCATGGAGCGATGGGCTTTGTACCAC
AACTTGGAGTATGATTCATCAGAGGAGAAGAAACCCCGGCTCATCTTCTATAATGAAAAG
GATGAGGTTGTAAAGACTGTTCCTGTGAAGAAAATGAAAGCAGACGAAATCAGCAGCCTG
TTGGATTCACTTGGTTTCTATAAGAGGTCCCAGAAAGGGGAAGAGGTGCCAGAGGAGTTT
CAGCATTTCCCCCTGCGCACCCCCAGGGACGAGCTG
//
OMLM01000156.1:subseq(38630,101420)	GeneWise	match	50027	51420	167.40	+	.	OMLM01000156.1:subseq(38630,101420)-genewise-prediction-1
OMLM01000156.1:subseq(38630,101420)	GeneWise	cds	50027	50082	0.00	+	0	OMLM01000156.1:subseq(38630,101420)-genewise-prediction-1
OMLM01000156.1:subseq(38630,101420)	GeneWise	intron	50083	50362	0.00	+	.	OMLM01000156.1:subseq(38630,101420)-genewise-prediction-1
OMLM01000156.1:subseq(38630,101420)	GeneWise	cds	50363	50441	0.00	+	1	OMLM01000156.1:subseq(38630,101420)-genewise-prediction-1
OMLM01000156.1:subseq(38630,101420)	GeneWise	intron	50442	51279	0.00	+	.	OMLM01000156.1:subseq(38630,101420)-genewise-prediction-1
OMLM01000156.1:subseq(38630,101420)	GeneWise	cds	51280	51420	0.00	+	0	OMLM01000156.1:subseq(38630,101420)-genewise-prediction-1
//